species:   Venon
pid:       PID2104
parent:    vna-miR-4-5p
paralog:   
locus:     PDEZ01000132.1:28942-29011
matures:   ['CGCGCCGCGAUGCCGCCG', 'GUCGGCCUCUCGGGCGAG']
srr:       SRR11514760
genome:    /Users/jax/+Genomes/Fungal_genomes/Venon.GCA_002776445.1_ASM277644v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Jesenicnik2022-cp.SRR11514760.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Jesenicnik2022-cp.SRR11514760.cram PDEZ01000132.1:28942-29011

2 out of bounds
5 alignments
5 proper strand
4 stranded perfect matches

             ********************   ********************              
AUGGCCGCGCUCUCGCGCGCCGCGAUGCCGCCGGCAUGGUCGGCCUCUCGGGCGAGAAGAAGCGCGCCAU
(((((.((((((((.(((.(((.((.((((((.....)).)))).)).)))))).).)).))))))))))
---------------CGCGCCGCGAUGCCGCCG------------------------------------- l=18 a=1 c
--------------------------------------GUCGGCCUCUCGGGCGAG-------------- l=18 a=0 c*
---------------CGCGCCGCGAUGCCGCCG------------------------------------- l=18 a=1 ma
--------------------------------------GUCGGCCUCUCGGGCGAG-------------- l=18 a=0 ma*

------------UCGCGCGCCGgGAU-------------------------------------------- l=14 a=1 
---------------CGCGCCGCGAUGCCGCCG------------------------------------- l=18 a=1 (c,ma)
-------------------------------------GGUCGGCCUCUC--------------------- l=12 a=1 
-------------------------------------GGUCGGCCUCUCGGGCGAGAAG----------- l=22 a=1 
------------------------------------------GCCUCUCGGGCGAG-------------- l=14 a=1 

mb-01111
ax-1011001
ku-01
ss-100011111100
fn-011
